Dr Katja Graumann
Senior Lecturer in Cell and Molecular Biology
School of Biological and Medical Sciences
Research
I am a senior lecturer in Cell Bilogy and a member of the plant biology group. My research focuses on the nuclear envelope in plants. I first became interested in this research area during my PhD studies (2005-2008) in the lab of Prof David Evans. Previous to this I completed my BSc in Cell and Human Biology here at Oxford Brookes University.
In eukaryotic cells the genetic material is surrounded by a membrane system called the nuclear envelope (NE). In plants, this membrane is poorly understood in terms of how it functions and what it consists of. My research focuses on studying protein components of the plant NE. During my PhD studies I identified two such proteins – the Sad1/Unc84 (SUN) domain proteins. I’m using cell and molecular biology techniques, biochemistry as well as microscopy to characterise the plant SUN proteins. This includes finding out what other proteins the SUNs bind to and what functions they have during cell division.
Groups
Publications
Journal articles
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Andov B, Boulaflous-Stevens A, Pain C, Mermet S, Voisin M, Charrondiere C, Vanrobays E, Tutois S, Evans DE, Kriechbaumer V, Tatout C, Graumann K, 'In depth topological analysis of Arabidopsis mid-SUN proteins and their interaction with the membrane-bound transcription factor MaMYB '
Plants 12 (9) (2023)
ISSN: 2223-7747 eISSN: 2223-7747AbstractPublished here Open Access on RADARAbstract: Mid-SUN proteins are a neglected family of conserved type III membrane proteins of ancient origin with representatives in plants, animals and fungi. Previous higher plant studies have associated them with functions at the nuclear envelope and the endoplasmic reticulum (ER). In this study, high-resolution confocal light microscopy is used to explore the localisation of SUN3 and SUN4 in the perinuclear region, to explore topology and to study the role of mid-SUNs on endoplasmic reticulum morphology. The role of SUN3 in the ER is reinforced by the identification of a protein interaction between SUN3 and the ER membrane-bound transcription factor maMYB. The results highlight the importance of mid-SUNs as functional components of the ER and outer nuclear membrane.
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Evans DE, Graumann K, 'Editorial: Understanding the key border: Structure, function, and dynamics of the plant nuclear envelope'
Frontiers in Plant Science 13 (2022)
ISSN: 1664-462X eISSN: 1664-462XAbstractPublished here Open Access on RADARThe Nuclear Envelope is a hallmark of eukaryotic cells. Despite its emerging role as a key structural and signaling platform, the plant NE remains one of the least understood membrane systems. This Frontiers Research Topic aims to highlight recent advances made to examine the role of the nuclear envelope (NE) as the “key border” in plants. Exploring this border is now proving hugely rewarding, with implications for many aspects of cell function and plant responses to the environment. Better understanding of this membrane system involves understanding its physical connections and its signaling and transport functions. Together they underpin its many functions- as an anchor and shaper; as a transport hub; and as a signaling center. The papers in this Topic provide current knowledge on all these aspects and a valuable basis for further advances.
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Mougeot G, Dubos T, Chausse F, Péry E, Graumann K, Tatout C, Evans DE, Desset S, 'Deep learning - Promises for 3D nuclear imaging. A guide for biologists'
Journal of Cell Science 135 (7) (2022)
ISSN: 0021-9533 eISSN: 1477-9137AbstractPublished here Open Access on RADARFor a century, the nucleus has been the focus of extensive investigations in cell biology. However, many questions remain about how its shape and size are regulated during development, in different tissues or during disease and aging. To track these changes, microscopy has long been the tool of choice. Image analysis has revolutionized this field of research by providing computational tools, translating qualitative images into quantitative parameters. Many tools were designed to delimit objects in 2D and eventually in 3D, to define their shapes, their number or position in nuclear space. Today, the field is driven by deep-learning methods, most taking advantage of convolutional neural networks. These techniques are remarkably adapted to biomedical images when trained on large datasets and powerful computer graphics cards. To promote these innovative and promising methods to cell biologists, this Review summarizes the main concepts and terminologies of deep learning. Special emphasis is placed on their availability. We highlight why quality and characteristics of training image datasets are important and where to find them, as well as how to create, store and share image datasets. Finally, we describe deep-learning methods well-suited for 3D analysis of nuclei and classify them according to their level of usability for biologists. Out of more than 150 published methods, we identify less than twelve that a biologist can use and explain why. Based on this experience, we propose best practices to share deep learning methods with biologists.
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Graumann K, 'Finding the missing piece of the puzzle: how NMCPs fit into the plant nuclear lamina'
Journal of Experimental Botany 72 (18) (2021) pp.6077-6080
ISSN: 0022-0957 eISSN: 1460-2431AbstractPublished hereThe composition of the plant nuclear lamina has long been of interest; while its overall network-like structure is similar to that of other eukaryotes, homologues of the key building blocks—lamins—are not present in plants. Although plant-specific lamin-like proteins have been characterized, it has remained unknown whether these are indeed present in the plant lamina. Using superresolution microscopy, Masuda et al. (2021) have now solved this puzzle. They show beautifully how the wellstudied Nuclear Matrix Constituent Protein 1 (NMCP1) and NMCP2 form filaments and bundles and are present in a filamentous network at the nuclear periphery—the plant nuclear lamina.
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McKenna JF, Gumber HK, Turpin ZM, Jalovec AM, Kartick AC, Graumann K, Bass HW, 'Maize (Zea mays L.) Nucleoskeletal Proteins Regulate Nuclear Envelope Remodeling and Function in Stomatal Complex Development and Pollen Viability'
Frontiers in Plant Science 12 (2021)
ISSN: 1664-462X eISSN: 1664-462XAbstractPublished hereIn eukaryotes, the nuclear envelope (NE) encloses chromatin and separates it from the rest of the cell. The Linker of Nucleoskeleton and Cytoskeleton (LINC) complex physically bridges across the NE, linking nuclear and cytoplasmic components. In plants, these LINC complexes are beginning to be ascribed roles in cellular and nuclear functions, including chromatin organization, regulation of nuclei shape and movement, and cell division. Homologs of core LINC components, KASH and SUN proteins, have previously been identified in maize. Here, we characterized the presumed LINC-associated maize nucleoskeletal proteins NCH1 and NCH2, homologous to members of the plant NMCP/CRWN family, and MKAKU41, homologous to AtKAKU4. All three proteins localized to the nuclear periphery when transiently and heterologously expressed as fluorescent protein fusions in Nicotiana benthamiana. Overexpression of MKAKU41 caused dramatic changes in the organization of the nuclear periphery, including nuclear invaginations that stained positive for non-nucleoplasmic markers of the inner and outer NE membranes, and the ER. The severity of these invaginations was altered by changes in LINC connections and the actin cytoskeleton. In maize, MKAKU41 appeared to share genetic functions with other LINC components, including control of nuclei shape, stomatal complex development, and pollen viability. Overall, our data show that NCH1, NCH2, and MKAKU41 have characteristic properties of LINC-associated plant nucleoskeletal proteins, including interactions with NE components suggestive of functions at the nuclear periphery that impact the overall nuclear architecture.
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Graumann K, Evans DE, 'Growing the nuclear envelope proteome'
Nature Plants 6 (2020) pp.740-741
ISSN: 2055-026X eISSN: 2055-0278AbstractPublished hereIdentifying protein components of the nuclear envelope is a slow and challenging process. Now a proximity labelling technique adapted for plants reveals novel protein components in this under-researched membrane.
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Dumur T, Duncan S, Graumann K, Desset S, Randall RS, Mittelsten Scheid O, Prodanov D, Tatout C, Baroux C, 'Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions'
Nucleus 10 (1) (2019) pp.181-212
ISSN: 1949-1034 eISSN: 1949-1042AbstractPublished hereThe eukaryotic cell nucleus is a central organelle whose architecture determines genome function at multiple levels. Deciphering nuclear organizing principles influencing cellular responses and identity is a timely challenge. Despite many similarities between plant and animal nuclei, plant nuclei present intriguing specificities. Complementary to molecular and biochemical approaches, 3D microscopy is indispensable for resolving nuclear architecture. However, novel solutions are required for capturing cell-specific, sub-nuclear and dynamic processes. We provide a pointer for utilising high-to-super-resolution microscopy and image processing to probe plant nuclear architecture in 3D at the best possible spatial and temporal resolution and at quantitative and cell-specific levels. High-end imaging and image-processing solutions allow the community now to transcend conventional practices and benefit from continuously improving approaches. These promise to deliver a comprehensive, 3D view of plant nuclear architecture and to capture spatial dynamics of the nuclear compartment in relation to cellular states and responses.
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Evans DE, Graumann K, Foisner R, 'Editorial for the SEB florence special issue: functional organisation of the nuclear periphery'
Nucleus 10 (1) (2019) pp.167-168
ISSN: 1949-1034 eISSN: 1949-1042AbstractPublished here -
Gumber HK, McKenna JF, Tolmie AF, Jalovec AM, Kartick AC, Graumann K, Bass HW, 'MLKS2 is an ARM domain and F-actin-associated KASH protein that functions in stomatal complex development and meiotic chromosome segregation'
Nucleus 10 (1) (2019) pp.144-166
ISSN: 1949-1034 eISSN: 1949-1042AbstractPublished hereThe linker of nucleoskeleton and cytoskeleton (LINC) complex is an essential multi-protein structure spanning the eukaryotic nuclear envelope. The LINC complex functions to maintain nuclear architecture, positioning, and mobility, along with specialized functions in meiotic prophase and chromosome segregation. Members of the LINC complex were recently identified in maize, an important scientific and agricultural grass species. Here we characterized Maize LINC KASH AtSINE-like2, MLKS2, which encodes a highly conserved SINE-group plant KASH protein with characteristic N-terminal armadillo repeats (ARM). Using a heterologous expression system, we showed that actively expressed GFP-MLKS2 is targeted to the nuclear periphery and colocalizes with F-actin and the endoplasmic reticulum, but not microtubules in the cell cortex. Expression of GFP-MLKS2, but not GFP-MLKS2ΔARM, resulted in nuclear anchoring. Genetic analysis of transposon-insertion mutations, mlks2-1 and mlks2-2, showed that the mutant phenotypes were pleiotropic, affecting root hair nuclear morphology, stomatal complex development, multiple aspects of meiosis, and pollen viability. In male meiosis, the mutants showed defects for bouquet-stage telomere clustering, nuclear repositioning, perinuclear actin accumulation, dispersal of late prophase bivalents, and meiotic chromosome segregation. These findings support a model in which the nucleus is connected to cytoskeletal F-actin through the ARM-domain, predicted alpha solenoid structure of MLKS2. Functional conservation of MLKS2 was demonstrated through genetic rescue of the misshapen nuclear phenotype of an Arabidopsis (triple-WIP) KASH mutant. This study establishes a role for the SINE-type KASH proteins in affecting the dynamic nuclear phenomena required for normal plant growth and fertility.
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Groves NR, McKenna JF, Evans DE, Graumann K, Meier I, 'A nuclear localization signal targets tail-anchored membrane proteins to the inner nuclear envelope in plants.'
Journal of Cell Science 132 (2019)
ISSN: 0021-9533 eISSN: 1477-9137AbstractPublished here Open Access on RADARProtein targeting to the inner nuclear membrane (INM) is one of the least understood protein targeting pathways. INM proteins are important for chromatin organization, nuclear morphology and movement, meiosis, and have been implicated in human diseases. In opisthokonts, one mechanism is transport-factor mediated trafficking, in which nuclear localization signals (NLSs) function in nuclear import of transmembrane proteins. To explore if this pathway exists in plants, we fused the SV40 NLS to a plant ER tail-anchored protein and showed that the GFP-tagged fusion protein was significantly enriched at the NE of leaf epidermal cells. Airyscan sub-diffraction limited confocal microscopy showed that it displays localization consistent with an INM protein. Nine different monopartite and bipartite NLSs from plants and opisthokonts, fused to a chimeric tail-anchored membrane protein, were all sufficient for NE enrichment and both monopartite or bipartite NLSs were sufficient for trafficking to the INM. Tolerance for different linker lengths and protein conformations suggests that INM trafficking rules might differ from those in opisthokonts. The INM proteins developed here can be used to target new functionalities to the plant nuclear periphery.
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Pradillo M, Evans DE, Graumann K, 'The nuclear envelope in higher plant mitosis and meiosis'
Nucleus 10 (1) (2019) pp.55-66
ISSN: 1949-1034 eISSN: 1949-1042AbstractPublished here Open Access on RADARMitosis and meiosis in higher plants involves significant reconfiguration of the nuclear envelope and the proteins that interact with it. The dynamic series of events involves a range of interactions, movement, breakdown and reformation of this complex system. Recently, progress has been made in identifying and characterising the protein and membrane interactome that performs these complex tasks, including constituents of the nuclear envelope, the cytoskeleton, nucleoskeleton and chromatin. This review will present current understanding of these interactions and advances in knowledge of the processes for the breakdown and reformation of the nuclear envelope during cell divisions in plants.
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Gumber HK, McKenna JF, Estrada AL, Tolmie AF, Graumann K, Bass HW, 'Identification and characterization of genes encoding the nuclear envelope LINC complex in the monocot species Zea mays.'
Journal of Cell Science 132 (2019)
ISSN: 0021-9533 eISSN: 1477-9137AbstractPublished here Open Access on RADARThe LINC (Linker of Nucleoskeleton to Cytoskeleton) complex is an essential multi protein structure spanning the nuclear envelope. It connects the cytoplasm to the nucleoplasm, functions to maintain nuclear shape and architecture, and regulates chromosome dynamics during cell division. Knowledge of LINC complex composition and function in the plant kingdom is primarily limited to Arabidopsis, but critically missing from the evolutionarily distant monocots which include grasses, the most important agronomic crops worldwide. To fill this knowledge gap, we identified and characterized 22 maize genes, including a new grass-specific KASH gene family. Using bioinformatic, biochemical, and cell biological approaches, we provide evidence that representative KASH candidates localize to the nuclear periphery and interact with ZmSUN2 in vivo. FRAP experiments using domain-deletion constructs verified that this SUN-KASH interaction was dependent on the SUN but not the coiled-coil domain of ZmSUN2. A summary working model is proposed for the entire maize LINC complex encoded by conserved and divergent gene families. These findings expand our knowledge of the plant nuclear envelope in a model grass species, with implications for both basic and applied cellular research.
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Evans DE, Graumann K, 'The Linker of Nucleoskeleton and Cytoskeleton Complex in higher plants'
Annual Plant Reviews 1 (1) (2018) pp.1-17
ISSN: 1460-1494AbstractThis linker of nucleoskeleton and cytoskeleton (LINC) complex provides a multifunctional bridge across the nuclear envelope, connection nucleoskeleton and cytoskeleton. This review considers the evidence for a LINC complex in higher plants and describes its key components, their functions and interactions. Evidence is presented that the complex is based on two families of Sad1/UNC84 homology (SUN) domain proteins in the inner nuclear envelope (C-ter SUNs and mid-SUNs) and three major groups of Klarsicht/ANC-1/Syne homology (KASH) domain proteins, WPP-domaininteracting proteins (WIPs), SUN-interacting nuclear envelope proteinsPublished here
(SINEs) and Toll Interleukin Receptor domain KASH protein (TIK). Recent advances in analysing the function of the complex in establishing nuclear shape and size, in nuclear movement and in connecting nucleoskeleton and cytoskeleton is described, together with its role in mitosis and meiosis. -
Tolmie AF, Poulet A, McKenna JF, Sassmann S, Graumann K, Deeks M, Runions J, 'The cell wall of Arabidopsis thaliana influences actin network dynamics'
Journal of Experimental Botany 68 (16) (2017) pp.4517-4527
ISSN: 0022-0957 eISSN: 1460-2431AbstractIn plant cells, molecular connections link the cell wall–plasma membrane–actin cytoskeleton to form a continuum. It is hypothesized that the cell wall provides stable anchor points around which the actin cytoskeleton remodels. Here we use live cell imaging of fluorescently labelled marker proteins to quantify the organization and dynamics of the actin cytoskeleton and to determine the impact of disrupting connections within the continuum. Labelling of the actin cytoskeleton with green fluorescent protein (GFP)–fimbrin actin-binding domain 2 (FABD2) resulted in a network composed of fine filaments and thicker bundles that appeared as a highly dynamic remodelling meshwork. This differed substantially from the GFP–Lifeact-labelled network that appeared much more sparse with thick bundles that underwent ‘simple movement’, in which the bundles slightly change position, but in such a manner that the structure of the network was not substantially altered during the time of observation. Label-dependent differences in actin network morphology and remodelling necessitated development of two new image analysis techniques. The first of these, ‘pairwise image subtraction’, was applied to measurement of the more rapidly remodelling actin network labelled with GFP–FABD2, while the second, ‘cumulative fluorescence intensity’, was used to measure bulk remodelling of the actin cytoskeleton when labelled with GFP–Lifeact. In each case, these analysis techniques show that the actin cytoskeleton has a decreased rate of bulk remodelling when the cell wall–plasma membrane–actin continuum is disrupted either by plasmolysis or with isoxaben, a drug that specifically inhibits cellulose deposition. Changes in the rate of actin remodelling also affect its functionality, as observed by alteration in Golgi body motility.Published here Open Access on RADAR -
Evans DE, Meier I, Graumann K, 'Editorial for the SEB Brighton Special Issue: Dynamic organization of the nucleus'
Nucleus 8 (1) (2017) pp.1-1
ISSN: 1949-1034 eISSN: 1949-1042AbstractEditorialPublished here Open Access on RADAR -
Poulet A, Probst AV, Graumann K, Tatout C, Evans DE, 'Exploring the evolution of the proteins of the plant nuclear envelope'
Nucleus 8 (1) (2016) pp.46-59
ISSN: 1949-1034 eISSN: 1949-1042AbstractIn this study, we explore the plasticity during evolution of proteins of the higher plant nuclear envelope (NE) from the most ancestral plant species to advanced angiosperms. The higherPublished here Open Access on RADARplant NE contains a functional Linker of Nucleoskeleton and Cytoskeleton (LINC) complex based on conserved Sad1-Unc84 (SUN) domain proteins and plant specific Klarsicht/Anc1/Syne homology (KASH) domain proteins. Recent evidence suggests the presence of a plant lamina underneath the inner membrane and various coiled-coil proteins have been hypothesised to be associated with it including Crowded Nuclei (CRWN; also termed LINC and NMCP), Nuclear Envelope Associated Protein (NEAP) protein families as well as the CRWN binding protein KAKU4. SUN domain proteins appear throughout with a key role for mid-SUN proteins suggested. Evolution of KASH domain proteins has resulted in increasing complexity, with some appearing in all species considered, while other KASH proteins are progressively gained during evolution. Failure to identify CRWN homologs in unicellular organisms included in the study and their presence in plants leads us to speculate that convergent evolution may have occurred in the formation of the lamina with each kingdom having new proteins such as the Lamin B receptor (LBR) and Lamin-Emerin-Man1 (LEM) domain proteins (animals) or NEAPs and KAKU4 (plants). Our data support a model in which increasing complexity at the nuclear envelope occurred through the plant lineage and suggest a key role for mid-SUN proteins as an early and essential component of the nuclear envelope.
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Pawar V, Poulet A, Détourné G, Tatout C, Vanrobays E, Evans DE, Graumann K, 'A novel family of plant nuclear envelope associated proteins'
Journal of Experimental Botany 67 (19) (2016) pp.5699-5710
ISSN: 0022-0957 eISSN: 1460-2431AbstractThis paper describes the characterisation of a new family of higher plant nuclear envelope associated proteins (NEAPs) that interact with proteins of the nuclear envelope. In the model plant Arabidopsis thaliana, the family consists of three genes expressed ubiquitously (AtNEAP1-3) and a pseudogene (AtNEAP4). NEAPs consist of extensive coiled-coil domains, followed by a nuclear localisation signal and a C-terminal predicted transmembrane domain. Domain deletion mutants confirm the presence of a functional nuclear localisation signal and transmembrane domain. AtNEAP proteins localise to the nuclear periphery as part of stable protein complexes, are able to form homo- and heteromers and interact with the SUN domain proteins AtSUN1 and AtSUN2, involved in the Linker of Nucleoskeleton and Cytoskeleton (LINC) complex. An A. thaliana cDNA library screen identified a putative transcription factor called AtbZIP18 as a novel interactor of AtNEAP1, which suggest a connection between NEAP and chromatin. An Atneap1 Atneap3 double knock out mutant showed reduced root growth and altered nuclear morphology and chromatin structure. Thus AtNEAPs are suggested as INM anchored coiled-coil proteins with roles in maintaining nuclear morphology and chromatin structure.Published here Open Access on RADAR -
Smith S, Galinha C, Desset S, Tolmie F, Evans D, Tatout C, Graumann K, 'Marker gene tethering by nucleoporins affects gene expression in plants'
Nucleus 6 (6) (2015) pp.471-478
ISSN: 1949-1034 eISSN: 1949-1042AbstractPublished here Open Access on RADARIn non-plant systems, chromatin association with the nuclear periphery affects gene expression, where interactions with nuclear envelope proteins can repress and interactions with nucleoporins can enhance transcription. In plants, both hetero- and euchromatin can localise at the nuclear periphery, but the effect of proximity to the nuclear periphery on gene expression remains largely unknown. This study explores the putative function of Seh1 and Nup50a nucleoporins on gene expression by using the Lac Operator / Lac Repressor (LacI-LacO) system adapted to Arabidopsis thaliana. We used LacO fused to the luciferase reporter gene (LacO:Luc) to investigate whether binding of the LacO:Luc transgene to nucleoporin:LacI protein fusions alters luciferase expression. Two separate nucleoporin-LacI-YFP fusions were introduced into single insert, homozygous LacO:Luc Arabidopsis plants. Homozygous plants carrying LacO:Luc and a single insert of either Seh1-LacI-YFP or Nup50a-LacI-YFP were tested for luciferase activity and compared to plants containing LacO:Luc only. Seh1-LacI-YFP increased, while Nup50a-LacI-YFP decreased luciferase activity. Seh1-LacI-YFP accumulated at the nuclear periphery as expected, while Nup50a-LacI-YFP was nucleoplasmic and was not selected for further study. Protein and RNA levels of luciferase were quantified by western blotting and RT-qPCR, respectively. Increased luciferase activity in LacO:Luc+Seh1-LacI-YFP plants was correlated with increased luciferase protein and RNA levels. This change of luciferase expression was abolished by disruption of LacI-LacO binding by treating with IPTG in young seedlings, rosette leaves and inflorescences. This study suggests that association with the nuclear periphery is involved in the regulation of gene expression in plants.
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Zhou X, Graumann K, Meier I, 'The plant nuclear envelope as a multifunctional platform LINCed by SUN and KASH'
Journal of Experimental Botany 66 (6) (2015) pp.1649-1659
ISSN: 0022-0957 eISSN: 1460-2431AbstractPublished hereThe nuclear envelope (NE) is a double membrane system enclosing the genome of eukaryotes. Besides nuclear pore proteins, which form channels at the NE, nuclear membranes are populated by a collection of NE proteins that perform various cellular functions. However, in contrast to well-conserved nuclear pore proteins, known NE proteins share little homology between opisthokonts and plants. Recent studies on NE protein complexes formed by Sad1/UNC-84 (SUN) and Klarsicht/ANC-1/Syne-1 Homology (KASH) proteins have advanced our understanding of plant NE proteins and revealed their function in anchoring other proteins at the NE, nuclear shape determination, nuclear positioning, anti-pathogen defence, root development, and meiotic chromosome organization. In this review, we discuss the current understanding of plant SUN, KASH, and other related NE proteins, and compare their function with the opisthokont counterparts.
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Varas J, Graumann K, Osman K, Pradillo M, Evans DE, Santos JL, Armstrong SJ, 'Absence of SUN1 and SUN2 proteins in Arabidopsis thaliana leads to a delay in meiotic progression and defects in synapsis and recombination'
The Plant Journal 81 (2) (2015) pp.329-346
ISSN: 0960-7412 eISSN: 1365-313XAbstractPublished hereThe movement of chromosomes during meiosis involves location of their telomeres at the inner surface of the nuclear envelope. Sad1/UNC-84 (SUN) domain proteins are inner nuclear envelope proteins that are part of complexes linking cytoskeletal elements with the nucleoskeleton, connecting telomeres to the force-generating mechanism in the cytoplasm. These proteins play a conserved role in chromosome dynamics in eukaryotes. Homologues of SUN domain proteins have been identified in several plant species. In Arabidopsis thaliana, two proteins that interact with each other, named AtSUN1 and AtSUN2, have been identified.
Immunolocalization using antibodies against AtSUN1 and AtSUN2 proteins revealed that they were associated with the nuclear envelope during meiotic prophase I. Analysis of the double mutant Atsun1-1 Atsun2-2 has revealed severe meiotic defects, namely a delay in the progression of meiosis, absence of full synapsis, the presence of unresolved interlock-like structures, and a reduction in the mean cell chiasma frequency. We propose that in Arabidopsis thaliana, overlapping functions of SUN1 and SUN2 ensure normal meiotic recombination and synapsis. -
Tatout C, Evans DE, Vanrobays E, Probst AV, Graumann K, 'The plant LINC complex at the nuclear envelope'
Chromosome Research 22 (2) (2014) pp.241-252
ISSN: 0967-3849 eISSN: 1573-6849AbstractSignificant advances in understanding the plant nuclear envelope have been made over the past few years; indeed, knowledge of the protein network at the nuclear envelope is rapidly growing. One such network, the linker of nucleoskeleton and cytoskeleton (LINC) complex, is known in animals to connect chromatin to the cytoskeleton through the nuclear envelope. The LINC complex is made of Sad1/Unc84 (SUN) and Klarsicht/Anc1/Syne1 homology (KASH) proteins which have been recently characterized in plants. SUN proteins are located within the inner nuclear membrane, while the KASH proteins are included into the outer nuclear membrane. SUN and KASH domains interact and bridge the two nuclear membranes. In Arabidopsis, KASH proteins also interact with the tryptophan-proline-proline (WPP) domain-interacting tail-anchored protein 1 (WIT1), associated with the nuclear pore complex and with myosin XI-i which directly interacts with the actin cytoskeleton. Although evidence for a plant LINC complex connecting the nucleus to the cytoskeleton is growing, its interaction with chromatin is still unknown, but knowledge gained from animal models strongly suggests its existence in plants. Possible functions of the plant LINC complex in cell division, nuclear shape, and chromatin organization are discussed.Published here Open Access on RADAR -
Evans DE, Pawar V, Smith SJ, Graumann K, 'Protein interactions at the higher plant nuclear envelope: evidence for a linker of nucleoskeleton and cytoskeleton complex'
Frontiers in Plant Science 5 (183) (2014)
ISSN: 1664-462X eISSN: 1664-462XAbstractPublished here Open Access on RADARFollowing the description of SAD1/UNC84 (SUN) domain proteins in higher plants, evidence has rapidly increased that plants contain a functional linker of nucleoskeleton and cytoskeleton (LINC) complex bridging the nuclear envelope (NE). While the SUN domain proteins appear to be highly conserved across kingdoms, other elements of the complex are not and some key components and interactions remain to be identified. This mini review examines components of the LINC complex, including proteins of the SUN domain family and recently identified plant Klarsicht/Anc/Syne-1 homology (KASH) domain proteins. First of these to be described were WIPs (WPP domain interacting proteins), which act as protein anchors in the outer NE. The plant KASH homologs are C-terminally anchored membrane proteins with the extreme C-terminus located in the nuclear periplasm; AtWIPs contain a highly conserved X-VPT motif at the C-terminus in contrast to PPPX in opisthokonts. The role of the LINC complex in organisms with a cell wall, and description of further LINC complex components will be considered, together with other potential plant-specific functions.
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Graumann K, Vanrobays E, Tutois S, Probst AV, Evans DE, Tatout C, 'Characterization of two distinct subfamilies of SUN-domain proteins in Arabidopsis and their interactions with the novel KASH-domain protein AtTIK'
Journal of Experimental Botany 65 (22) (2014) pp.6499-6512
ISSN: 0022-0957 eISSN: 1460-2431AbstractPublished hereSUN-domain proteins belong to a gene family including classical Cter-SUN and mid-SUN subfamilies differentiated by the position of the SUN domain within the protein. Although present in animal and plant species, mid-SUN proteins have so far remained poorly described. Here, we used a combination of genetics, yeast two-hybrid and in planta transient expression methods to better characterize the SUN family in Arabidopsis thaliana. First, we validated the mid-SUN protein subfamily as a monophyletic group conserved from yeast to plant. Arabidopsis Cter-SUN (AtSUN1 and AtSUN2) and mid-SUN (AtSUN3 and AtSUN4) proteins expressed as fluorescent protein fusions are membrane-associated and localize to the nuclear envelope (NE) and endoplasmic reticulum. However, only the Cter-SUN subfamily is enriched at the NE. We investigated interactions in and between members of the two subfamilies and identified the coiled-coil domain as necessary for mediating interactions. The functional significance of the mid-SUN subfamily was further confirmed in mutant plants as essential for early seed development and involved in nuclear morphology. Finally, we demonstrated that both subfamilies interact with the KASH domain of AtWIP1 and identified a new root-specific KASH-domain protein, AtTIK. AtTIK localizes to the NE and affects nuclear morphology. Our study indicates that Arabidopsis Cter-SUN and mid-SUN proteins are involved in a complex protein network at the nuclear membranes, reminiscent of the LInker of Nucleoskeleton and Cytoskeleton (LINC) complex found in other kingdoms.
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Graumann K, 'Evidence for LINC1-SUN associations at the plant nuclear periphery'
PLoS ONE 9 (3) (2014)
ISSN: 1932-6203AbstractPublished hereSad1/UNC84 (SUN) domain proteins are a highly conserved family of inner nuclear membrane localised proteins in eukaryotes. One of their main functions is as key components of nucleo-cytoskeletal bridging complexes, in which SUN proteins associate with nucleoskeletal elements. In metazoans these are the lamins, which form a supportive structural network termed the lamina. Plants lack sequence homologs of lamins but have a similar nucleoplasmic structural network to support the plant NE. Putative components of this plant lamina-like structure are Little Nuclei (LINC) proteins, which bear structural resemblance to lamins and fulfil similar functions. This work explores the associations between AtLINC1, AtSUN1 and AtSUN2. AtLINC1 is recruited to the NE by SUN proteins and is immobilised therein. This recruitment and the immobile properties are likely due to AtSUN1/2-AtLINC1 protein interactions occurring in planta. In addition, the SUN N-terminus appears to play an important role in mediating these interactions. The associations between AtLINC1 and plant SUN proteins are a first indicator of how the nucleoskeleton may be anchored to the nuclear membrane in plants. Building on the previous characterisation of Klarsicht/Anc1/Syne1 homology (KASH) like proteins in plants, this study advances the identification and characterisation of nucleo-cytoskeletal bridging complexes in plants.
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Zhou X, Graumann K, Wirthmueller L, Jones JDG, Meier I, 'Identification of unique SUN-interacting nuclear envelope proteins with diverse functions in plants'
Journal of Cell Biology 205 (5) (2014) pp.677-692
ISSN: 0021-9525 eISSN: 1540-8140AbstractPublished here Open Access on RADARAlthough a plethora of nuclear envelope (NE) transmembrane proteins (NETs) have been identified in opisthokonts, plant NETs are largely unknown. The only known NET homologues in plants are Sad1/UNC-84 (SUN) proteins, which bind Klarsicht/ANC-1/Syne-1 homology (KASH) proteins. Therefore, de novo identification of plant NETs is necessary. Based on similarities between opisthokont KASH proteins and the only known plant KASH proteins, WPP domain–interacting proteins, we used a computational method to identify the KASH subset of plant NETs. Ten potential plant KASH protein families were identified, and five candidates from four of these families were verified for their NE localization, depending on SUN domain interaction. Of those, Arabidopsis thaliana SINE1 is involved in actin-dependent nuclear positioning in guard cells, whereas its paralogue SINE2 contributes to innate immunity against an oomycete pathogen. This study dramatically expands our knowledge of plant KASH proteins and suggests that plants and opisthokonts have recruited different KASH proteins to perform NE regulatory functions.
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Meadows JC, Graumann K, Platani M, Schweizer N, Shimi T, Vagnarelli P, Gatlin JC, 'Meeting report: mitosis and nuclear structure'
Journal of Cell Science 126 (22) (2013) pp.5087-5090
ISSN: 0021-9533 eISSN: 1477-9137AbstractPublished hereThe Company of Biologists Workshop entitled 'Mitosis and Nuclear Structure' was held at Wiston House, West Sussex in June 2013. It provided a unique and timely opportunity for leading experts from different fields to discuss not only their own work but also its broader context. Here we present the proceedings of this meeting and several major themes that emerged from the crosstalk between the two, as it turns out, not so disparate fields of mitosis and nuclear structure. Co-chaired by Katherine Wilson (Johns Hopkins School of Medicine, Baltimore, MD), Timothy Mitchison (Harvard University, Cambridge, MA) and Michael Rout (Rockefeller University, New York, NY), this workshop brought together a small group of scientists from a range of disciplines to discuss recent advances and connections between the areas of mitosis and nuclear structure research. Several early-career researchers (students, postdoctoral researchers, junior faculty) participated along with 20 senior scientists, including the venerable and affable Nobel Laureate Tim Hunt. Participants were encouraged to embrace unconventional thinking in the 'scientific sandbox' created by this unusual combination of researchers in the inspiring, isolated setting of the 16th-century Wiston House.
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Cook GS, Gronlund AL, Siciliano I, Spadafora N, Amini M, Herbert RJ, Bitonti MB, Graumann K, Francis D, Rogers HJ, 'Plant Wee1 Kinase Is Cell Cycle Regulated and Removed at Mitosis Via the 26s Proteasome Machinery'
Journal of Experimental Botany 64 (2013) pp.2093-2105
ISSN: 0022-0957 eISSN: 1460-2431AbstractPublished hereIn yeasts and animals, premature entry into mitosis is prevented by the inhibitory phosphorylation of cyclin-dependent kinase (CDK) by WEE1 kinase, and, at mitosis, WEE1 protein is removed through the action of the 26S proteasome. Although in higher plants WEE1 function has been confirmed in the DNA replication checkpoint, Arabidopsis wee1 insertion mutants grow normally, and a role for the protein in the G2/M transition during an unperturbed plant cell cycle is yet to be confirmed. Here data are presented showing that the inhibitory effect of WEE1 on CDK activity in tobacco BY-2 cell cultures is cell cycle regulated independently of the DNA replication checkpoint: it is high during S-phase but drops as cells traverse G2 and enter mitosis. To investigate this mechanism further, a yeast two-hybrid screen was undertaken to identify proteins interacting with Arabidopsis WEE1. Three F-box proteins and a subunit of the proteasome complex were identified, and bimolecular fluorescence complementation confirmed an interaction between AtWEE1 and the F-box protein SKP1 INTERACTING PARTNER 1 (SKIP1). Furthermore, the AtWEE1–green fluorescent protein (GFP) signal in Arabidopsis primary roots treated with the proteasome inhibitor MG132 was significantly increased compared with mock-treated controls. Expression of AtWEE1–YFPC (C-terminal portion of yellow fluorescent protein) or AtWEE1 per se in tobacco BY-2 cells resulted in a premature increase in the mitotic index compared with controls, whereas co-expression of AtSKIP1–YFPN negated this effect. These data support a role for WEE1 in a normal plant cell cycle and its removal at mitosis via the 26S proteasome.
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Graumann K, Bass HW, Parry G, 'Sunrises on the International Plant Nucleus Consortium: Seb Salzburg 2012'
Nucleus 4 (2013) pp.3-7
ISSN: 1949-1034 eISSN: 1949-1042AbstractPublished hereThe nuclear periphery is a dynamic, structured environment, whose precise functions are essential for global processes-from nuclear, to cellular, to organismal. Its main components-the nuclear envelope (NE) with inner and outer nuclear membranes (INM and ONM), nuclear pore complexes (NPC), associated cytoskeletal and nucleoskeletal components as well as chromatin are conserved across eukaryotes (Fig. 1). In metazoans in particular, the structure and functions of nuclear periphery components are intensely researched partly because of their involvement in various human diseases. While far less is known about these in plants, the last few years have seen a significant increase in research activity in this area. Plant biologists are not only catching up with the animal field, but recent findings are pushing our advances in this field globally. In recognition of this developing field, the Annual Society of Experimental Biology Meeting in Salzburg kindly hosted a session co-organized by Katja Graumann and David E. Evans (Oxford Brookes University) highlighting new insights into plant nuclear envelope proteins and their interactions. This session brought together leading researchers with expertise in topics such as epigenetics, meiosis, nuclear pore structure and functions, nucleoskeleton and nuclear envelope composition. An open and friendly exchange of ideas was fundamental to the success of the meeting, which resulted in founding the International Plant Nucleus Consortium. This review highlights new developments in plant nuclear envelope research presented at the conference and their importance for the wider understanding of metazoan, yeast and plant nuclear envelope functions and properties. -
Zhou X, Graumann K, Evans D, Meier I, 'Novel plant SUN-KASH bridges are involved in RanGAP anchoring and nuclear shape determination'
Journal of Cell Biology 196 (2) (2012) pp.203-211
ISSN: 0021-9525AbstractPublished hereInner nuclear membrane Sad1/UNC-84 (SUN) proteins interact with outer nuclear membrane (ONM) Klarsicht/ANC-1/Syne homology (KASH) proteins, forming linkers of nucleoskeleton to cytoskeleton conserved from yeast to human and involved in positioning of nuclei and chromosomes. Defects in SUN-KASH bridges are linked to muscular dystrophy, progeria, and cancer. SUN proteins were recently identified in plants, but their ONM KASH partners are unknown. Arabidopsis WPP domain interacting proteins (AtWIPs) are plant-specific ONM proteins that redundantly anchor Arabidopsis RanGTPase-activating protein 1 (AtRanGAP1) to the nuclear envelope (NE). In this paper, we report that AtWIPs are plant-specific KASH proteins interacting with Arabidopsis SUN proteins (AtSUNs). The interaction is required for both AtWIP1 and AtRanGAP1 NE localization. AtWIPs and AtSUNs are necessary for maintaining the elongated nuclear shape of Arabidopsis epidermal cells. Together, our data identify the first KASH members in the plant kingdom and provide a novel function of SUN-KASH complexes, suggesting that a functionally diverged SUN-KASH bridge is conserved beyond the opisthokonts.
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Graumann K, Evans DE, 'Nuclear envelope dynamics during plant cell division suggest common mechanisms between kingdoms'
Biochemical Journal 435 (3) (2011) pp.661-667
ISSN: 0264-6021 eISSN: 1470-8728AbstractPublished hereBehaviour of the NE (nuclear envelope) during open mitosis has been explored extensively in metazoans, but lack of native markers has limited similar investigations in plants. In the present study, carried out using living synchronized tobacco BY-2 suspension cultures, the non-functional NE marker LBR (lamin B receptor)-GFP (green fluorescent protein) and two native, functional NE proteins, AtSUN1 [Arapidopsis thaliana SUN (Sad1/UNC84) 1] and AtSUN2, we provide evidence that the ER (endoplasmic reticulum)-retention theory for NE membranes is applicable in plants. We also observe two apparently unique plant features: location of the NE-membrane components in close proximity to chromatin throughout division, and spatially distinct reformation of the NE commencing at the chromatin surface facing the spindle poles and concluding at the surface facing the cell plate. Mobility of the proteins was investigated in the interphase NE, during NE breakdown and reformation, in the spindle membranes and the cell plate. A role for AtSUN2 in nuclear envelope breakdown is suggested.
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Evans DE, Shvedunova M, Graumann K, 'The Nuclear Envelope in the Plant Cell Cycle: Structure, Function and Regulation'
Annals of Botany 107 (2011) pp.1111-1118
ISSN: 0305-7364 eISSN: 1095-8290AbstractBackground. Higher plants are, like animals, organisms in which successful completion of the cell cycle requires the breakdown and reformation of the nuclear envelope in a highly controlled manner. Interestingly, however, while the structures and processes appear similar, there are remarkable differences in protein composition and function between plants and animals.Published here
Scope. Recent characterization of integral and associated components of the plant nuclear envelope has been instrumental in understanding its functions and behaviour. It is clear that protein interactions at the nuclear envelope are central to many processes in interphase and dividing cells and that the nuclear envelope has a key role in structural and regulatory events.
Conclusion. Dissecting the mechanisms of nuclear envelope breakdown and reformation in plants is necessary before a better understanding of the functions of nuclear envelope components during the cell cycle can be gained. -
Graumann K, Runions J, Evans DE, 'Characterization of SUN-domain proteins at the higher plant nuclear envelope'
The Plant Journal 61 (1) (2010) pp.134-144
ISSN: 0960-7412AbstractPublished hereSad1/UNC-84 (SUN)-domain proteins are inner nuclear membrane (INM) proteins that are part of bridging complexes linking cytoskeletal elements with the nucleoskeleton, and have been shown to be conserved in non-plant systems. In this paper, we report the presence of members of this family in the plant kingdom, and investigate the two Arabidopsis SUN-domain proteins, AtSUN1 and AtSUN2. Our results indicate they contain the highly conserved C-terminal SUN domain, and share similar structural features with animal and fungal SUN-domain proteins including a functional coiled-coil domain and nuclear localization signal. Both are expressed in various tissues with AtSUN2 expression levels relatively low but upregulated in proliferating tissues. Further, we found AtSUN1 and AtSUN2 expressed as fluorescent protein fusions, to localize to and show low mobility in the nuclear envelope (NE), particularly in the INM. Deletion of various functional domains including the N terminus and coiled-coil domain affect the localization and increase the mobility of AtSUN1 and AtSUN2. Finally, we present evidence that AtSUN1 and AtSUN2 are present as homomers and heteromers in vivo, and that the coiled-coil domains are required for this. The study provides evidence suggesting the existence of cytoskeletal-nucleoskeletal bridging complexes at the plant NE.
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Graumann K, Runions J, Evans DE, 'Nuclear envelope proteins and their role in nuclear positioning and replication'
Biochemical Society Transactions 38 (3) (2010) pp.741-746
ISSN: 0300-5127 eISSN: 1470-8752AbstractPublished hereControlled movement Of the nucleus is important in a wide variety of plant cellular events Positioning involving intact nuclei occurs in cell division, development, tip growing systems such as the root hair and in response to stimuli, including light, touch and infection. Positioning is also essential in the division and replication of nuclear components, ranging from chromosome attachment to the breakdown and reformation of the nuclear envelope. Although description and understanding of the processes involved have advanced rapidly in recent years, significant gaps remain in our knowledge, especially concerning nuclear proteins involved in anchoring and interacting with cytoskeletal and nucleoskeletal elements involved in movement. In the present review, processes involving the movement and positioning of nuclei and nuclear components are described together with novel proteins implicated in nucleoskeletal and cytoskeletal interactions.
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Graumann K, Evans D, 'The plant nuclear envelope in focus'
Biochemical Society Transactions 38 (1) (2010) pp.307-311
ISSN: 0300-5127 eISSN: 1470-8752AbstractRecent progress in understanding the plant NE (nuclear envelope) has resulted from significant advances in identifying and characterizing the protein constituents of the membranes and nuclear pores. Here, we review recent findings on the membrane integral and membrane-associated proteins of the key domains of the NE, the pore domain and inner and outer NEs, together with information on protein targeting and NE function.Published here -
Runions J, Shvedunova M, Graumann K, Evans DE, 'Dynamic interrelationships of secretory pathway endomembranes during cell division'
Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 150 (3) (2008) pp.201-201
ISSN: 1095-6433Published here -
Evans D, Graumann K, 'Probing the plant nuclear envelope'
Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 150 (3) (2008) pp.199-200
ISSN: 1095-6433Abstracthe higher plant nuclear envelope (NE) remains poorly characterised. The plant NE resembles that of cells of other kingdoms; it is a double membrane structure, perforated by nuclear pores and linked to surrounding endoplasmic reticulum (ER). Despite this structural similarity, however, it shows a number of unique properties. Firstly, unlike yeast, but in common with most eukaryotes, plants show an unusually complex open cell division. Secondly, whereas in animal cells the structure of the NE is linked to a meshwork of nuclear lamins that constitute the nucleoskeleton, plants lack sequence homologues of the lamins. Thirdly, many of the proteins of the inner NE described in other species, the lamin B receptor (LBR), MAN1, otefin, nurim, emerin and LAPs 1 and 2, are not present in the plant nuclear envelope proteome. In this talk, we will present current knowledge on the structure and composition of the plant NE. Development of protein probes for the plant NE and their use for investigating NE targeting and NE dynamics will then be presented. The talk will conclude with discussion of areas where understanding of the dynamics of the plant NE and its relationship with other organelles is limited.Published here -
Irons S, Graumann K, Runions J, Evans DE, 'Studies on the nuclear envelope targeting and retention of the N-terminus of the mammalian lamin B receptor expressed in plant cells'
Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 150 (3) (2008) pp.202-202
ISSN: 1095-6433AbstractPublished hereA GFP fusion to the N-terminal 238 amino acids of the mammalian lamin B receptor (LBR) localises to the nuclear envelope (NE) when expressed in Nicotiana tabacum plants, showing properties expected of a native plant NE protein. In this study, we have used this chimaeric construct to explore evidence for common mechanisms of NE targeting and retention between plants and animals, given there is no plant homologue of the mammalian LBR or of one of its binding partners, lamin B. Binding mutants of LBR-GFP were created and fluorescence recovery after photobleaching of mutant and wild type constructs employed to examine their retention in the plant NE. Unmutated LBR-GFP was significantly less mobile in the NE than the lamin binding domain deletion mutant, which was also localised to theER and punctate structures in some cells. Mutation of the chromatin binding domain resulted in localisation of the protein in nuclear inclusions, in which it was immobile. Our findings, that expression of truncated LBR-GFP in plant cells results in altered targeting and retention relative to wt LBR-GFP, suggest that plant cells can recognize the INM-targeting motif of LBR. Altered mobility of the truncated probe indicates that not only do plant cells recognize this signal, but also have nuclear proteins that interact weakly with LBR.
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Graumann K, Evans DE, Irons S, Runions J, 'Dynamics of the lamin B receptor in the plant nuclear envelope'
Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 146 (4, Supplement) (2007) pp.S193-S193
ISSN: 1095-6433 eISSN: 1531-4332AbstractPublished hereThe nuclear envelope (NE) is a double membrane system consisting of the inner nuclear envelope (INE), the outer nuclear envelope (ONE) and nuclear pore complexes (NPCs). Most of our knowledge about the NE proteome comes from studies in animal systems. Recent investigations in plant systems have shown that plants do not have homologues for the majority of animal NE proteins. In a previous study in our laboratory, a construct consisting of the N-terminus of the human lamin B receptor (LBR) fused to GFP was shown to target the plant INE. In mammalian cells, LBR is an intrinsic INE protein, whose targeting to the INE is facilitated by a nuclear localization signal and retention in the INE is achieved by LBR binding mainly to chromatin and lamins. In this study the targeting and retention of LBR–GFP in the plant NE has been investigated by introducing mutations in key domains of LBR and employing fluorescence recovery after photobleaching experiments. Mutation of the chromatin binding domain caused LBR to accumulate in nuclear inclusions in which it was immobile. Deletion of the lamin binding domain resulted in the construct being localized not only to the NE but also ER and to be significantly more mobile then the wild type LBR–GFP in the NE. In the case of both the lamin binding deletion and wild type LBR–GFP, mobility was found to be much greater than previously described in mammalian cells. (Abstracts of the Annual Main Meeting of the Society for Experimental Biology, Glasgow, Scotland, 31st March - 4th April, 2007)
Book chapters
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Poulet A, Zhou X, Tamura K, Meier I, Tatout C, Graumann K, Evans DE, 'Computational Methods for Studying the Plant Nucleus' in Gundersen GG, Worman HJ (ed.), The LINC Complex (Methods in Molecular Biology, Vol. 1840), Springer (2018)
ISBN: 9781493986903 eISBN: 9781493986910AbstractPublished hereThe analysis of nuclear envelope components and their function has recently been progressed by the use of computational methods of analysis. The methods in this chapter provided by members of the International Plant Nucleus Consortium address the identification of novel nuclear envelope proteins and the study of structure and mobility of the nucleus. DORY2 is an upgrade of the KASH-finder DORY, and NucleusJ is used to characterize the three-dimensional structure of the nucleus in light microscope images. Finally, a method is provided for analysis of the migration of the nucleus, a key technique for exploring the function of plant nuclear proteins.
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Zhou X, Tamura K, Graumann K, Meier I, 'Exploring the Protein Composition of the Plant Nuclear Envelope' in Shackleton S, Collas P, Schirmer EC (ed.), Methods in Molecular Biology, Springer (2016)
ISBN: 9781493935284 eISBN: 9781493935307AbstractPublished hereDue to rather limited sequence similarity, targeted identification of plant nuclear envelope and nuclear pore complex proteins has mainly followed two routes: (1) advanced computational identification followed by experimental verification and (2) immunoaffinity purification of complexes followed by mass spectrometry. Following candidate identification, fluorescence recovery after photobleaching (FRAP) and fluorescence resonance energy transfer (FRET) provide powerful tools to verify protein-protein interactions in situ at the NE. Here, we describe these methods for the example of Arabidopsis thaliana nuclear pore and nuclear envelope protein identification.
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Evans DE, Graumann K, 'Dynamics of the Plant Nuclear Envelope During Cell Division' in Methods in Molecular Biology, Springer (2016)
ISBN: 9781493931415 eISBN: 9781493931422AbstractPublished hereThe use of suspension cultures synchronised by aphidicolin provides a method to study cell division in living plant cells. This chapter describes the use of this technique in tobacco suspension cultures expressing nuclear and nuclear envelope proteins that have been fused to fluorescent proteins. The protocol provides advice on optimizing synchrony and on real-time imaging by confocal microscopy.
Conference papers
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Graumann K, Irons S, Runions J, Evans D, 'SUN domain proteins at the plant nuclear envelope'
150 (3 (Supplement)) (2008) pp.S202-S202
ISSN: 1095-6433AbstractPublished hereThe nuclear envelope (NE) is a double membrane system that forms a protective barrier around chromatin and organises intranuclear structures and activities. The outer nuclear membrane (ONM) is continuous with the ER and associates with cytoskeletal elements. The inner nuclear membrane (INM) interacts with chromatin and the nucleoskeleton and plays a fundamental role in orchestrating nuclear functions such as nucleic acid metabolism. Most of our knowledge of the NE proteome and its functions comes from studies in animal systems. Despite its importance, the plant NE remains poorly understood. Here we present the characterisation of two novel NE proteins, AtSUN1 and AtSUN2, plant homologues of a group of animal and yeast INM proteins containing a well conserved SUN (Sad1/UNC84 homology) domain important for nucleo-cytoskeletal linkage. Both proteins share a similar domain layout to their animal counterparts and appear to interact with each other as indicated by fluorescence resonance energy transfer. Confocal microscopy of fluorescent protein fusions and electron microscopy suggest localisation to the plant INM. Deletion of either the SUN domain or a nuclear localisation signal abolishes this localisation. These SUN domain proteins are the first true inner nuclear envelope proteins to be identified in plants and provide the first evidence for a plant Linker of Cytoskeleton and Nucleoskeleton Complex.
Other publications
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Sparkes IA, Graumann K, Martiniere A, Schoberer J, Wang P, Osterrieder A, 'Bleach It, Switch It, Bounce It, Pull It: Using Lasers to Reveal Plant Cell Dynamics', (2011)
AbstractSince the production of Robert Hooke's intricate diagrams of the microcomos in the mid-seventeenth century (Hooke, 1665), the use of the light microscope has undergone a technological revolution. Techniques and optics have greatly advanced, allowing us not only to describe the morphology of a specimen but also to probe the movement and dynamics of proteins and organelles within the cell. One of the most significant molecular and genetic advancements has been the isolation, engineering, and use of green fluorescent protein (GFP) to allow the visualization of protein fusions. In 2008, the impact GFP has had on cell biology was recognized by awarding the Nobel prize in Chemistry to the scientists involved in the pioneering initial discovery and development of its use as a fluorescent molecular tag. GFP was isolated from the jellyfish Aequorea victoria and has been expressed in a wide range of organisms including several species of plant. Subsequent engineering of GFP has resulted in multiple fluorophores with differing excitation/emission spectra allowing the visualization of two protein fusions (dual imaging) in the same cell (Shaner et al., 2007). There are numerous fluorescent protein fusions readily available to light up any organelle (Nelson et al., 2007; Geldner et al., 2009), and the generation of fusions can easily be produced using the available binary vectors (Karimi et al., 2007).Published hereThis commentary briefly summarizes laser-based microscopy techniques which have expanded beyond the pure analysis of protein localization and steady-state levels, gene expression or organelle movement to allow the quantitative studies of protein and organelle dynamics.